Charcoal summary report for genome `GCF_900016235.2_genomic.fna.gz`¶

Genome lineage: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales

estimated clean / contaminated bp at each taxonomic rank¶

superkingdom: good 3.6 Mbp / bad 0 bp
phylum: good 3.6 Mbp / bad 10.5 kb
class: good 3.6 Mbp / bad 10.5 kb
order: good 3.6 Mbp / bad 10.5 kb
family: good 237.7 kb / bad 3.4 Mbp
genus: good 237.7 kb / bad 3.4 Mbp

Of the total 3.6 Mbp in the genome file, 80.0 kb could not be identified with the database used, and 65.7 kb was ignored by sourmash due to the scaled/ksize values used.

Charcoal summary report for genome `GCF_900016235.2_genomic.fna.gz`¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome GCF_900016235.2_genomic.fna.gz¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome `GCF_900016235.2_genomic.fna.gz`¶