Charcoal summary report for genome `GCF_001749745.1_genomic.fna.gz`¶

Genome lineage: d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales

estimated clean / contaminated bp at each taxonomic rank¶

superkingdom: good 5.2 Mbp / bad 0 bp
phylum: good 5.2 Mbp / bad 7.6 kb
class: good 5.2 Mbp / bad 7.6 kb
order: good 5.2 Mbp / bad 7.6 kb
family: good 5.2 Mbp / bad 12.9 kb
genus: good 5.2 Mbp / bad 12.9 kb

Of the total 5.2 Mbp in the genome file, 3.2 Mbp could not be identified with the database used, and 177.1 kb was ignored by sourmash due to the scaled/ksize values used.

Charcoal summary report for genome `GCF_001749745.1_genomic.fna.gz`¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome GCF_001749745.1_genomic.fna.gz¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome `GCF_001749745.1_genomic.fna.gz`¶