Charcoal alignment report for genome GCF_001683825.1_genomic.fna.gz

filtering dirty alignments to query size >= 500 and identity >= 95%

dirty bases: 191.6kb of alignments to query genome, across all targets.

filtering clean alignments to query size >= 500 and identity >= 95%

clean bases: 0.0kb of alignments to query genome, across all targets.

filtering dirty alignments to query size >= 500 and identity >= 95%

filtering dirty alignments to min query coverage 50%

dirty bases: 191.6kb of alignments to query genome, across all targets.

removing 192kb total in contigs >= 50% dirty, based on alignments at 95% identity over 0.5kb or more

Alignment views

no alignments to clean genomes to show!

showing 12 dirty alignments total.

Contig alignment report

dirty bases: 191.6kb of alignments to query genome, across all targets.

contig name NZ_LXTR01000051.1, total size 61kb, of which 61kb (100%) aligns to other genomes with a taxonomic mismatch.

• 61kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000051.1[0:60923] to database NZ_AP018444.1[110202:49854]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000017.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018443.1 at 100.0% identity

  • alignment from query NZ_LXTR01000017.1[0:5112] to database NZ_AP018443.1[2482892:2487891]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000060.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000060.1[0:4999] to database NZ_AP018444.1[48246:43247]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000060.1[24:5023] to database NZ_AP018444.1[48246:43247]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000013.1, total size 27kb, of which 27kb (100%) aligns to other genomes with a taxonomic mismatch.

• 27kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000013.1[0:27119] to database NZ_AP018444.1[157713:130027]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000053.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018443.1 at 100.0% identity

  • alignment from query NZ_LXTR01000053.1[0:5056] to database NZ_AP018443.1[9064:14063]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000075.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018443.1 at 100.0% identity

  • alignment from query NZ_LXTR01000075.1[0:5377] to database NZ_AP018443.1[1174134:1179133]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000091.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 99.8% identity

  • alignment from query NZ_LXTR01000091.1[0:5663] to database NZ_AP018444.1[116386:110077]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000087.1, total size 11kb, of which 11kb (100%) aligns to other genomes with a taxonomic mismatch.

• 10kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000087.1[0:9999] to database NZ_AP018444.1[129679:118925]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

• 5kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000087.1[5927:10926] to database NZ_AP018444.1[123924:118925]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

contig name NZ_LXTR01000046.1, total size 66kb, of which 66kb (100%) aligns to other genomes with a taxonomic mismatch.

• 41kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 100.0% identity

  • alignment from query NZ_LXTR01000046.1[25000:66363] to database NZ_AP018444.1[1293:42421]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes

• 25kb aligns to genome GCF_000534935.2, contig NZ_AP018444.1 at 99.4% identity

  • alignment from query NZ_LXTR01000046.1[0:24999] to database NZ_AP018444.1[157589:181188]
  • disagreement at rank 'phylum'; query lineage p__Bacteroidota, database lineage p__Firmicutes