Charcoal summary report for genome `GCF_001408335.1_genomic.fna.gz`¶

Genome lineage: d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales

estimated clean / contaminated bp at each taxonomic rank¶

superkingdom: good 3.0 Mbp / bad 0 bp
phylum: good 3.0 Mbp / bad 15.5 kb
class: good 858.2 kb / bad 2.1 Mbp
order: good 858.2 kb / bad 2.1 Mbp
family: good 858.2 kb / bad 2.1 Mbp
genus: good 858.2 kb / bad 2.1 Mbp

Of the total 3.0 Mbp in the genome file, 161.5 kb could not be identified with the database used, and 19.9 kb was ignored by sourmash due to the scaled/ksize values used.

Charcoal summary report for genome `GCF_001408335.1_genomic.fna.gz`¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome GCF_001408335.1_genomic.fna.gz¶

estimated clean / contaminated bp at each taxonomic rank¶

How clean and dirty content changes by taxon¶

Taxonomic assignments across ranks¶

Charcoal summary report for genome `GCF_001408335.1_genomic.fna.gz`¶