Charcoal alignment report for genome GCA_003222535.1_genomic.fna.gz

filtering dirty alignments to query size >= 500 and identity >= 95%

dirty bases: 239.8kb of alignments to query genome, across all targets.

filtering clean alignments to query size >= 500 and identity >= 95%

clean bases: 15.0kb of alignments to query genome, across all targets.

filtering dirty alignments to query size >= 500 and identity >= 95%

filtering dirty alignments to min query coverage 50%

dirty bases: 62.0kb of alignments to query genome, across all targets.

removing 80kb total in contigs >= 50% dirty, based on alignments at 95% identity over 0.5kb or more

Alignment views

showing 1 clean alignments total.

showing 9 dirty alignments total.

Contig alignment report

dirty bases: 62.0kb of alignments to query genome, across all targets.

contig name QHWJ01000114.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCA_003221985.1, contig QHUQ01000237.1 at 97.9% identity

  • alignment from query QHWJ01000114.1[0:6079] to database QHUQ01000237.1[0:3879]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000400.1, total size 9kb, of which 5kb (57%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003221985.1, contig QHUQ01000091.1 at 97.0% identity

  • alignment from query QHWJ01000400.1[0:4999] to database QHUQ01000091.1[0:3621]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000177.1, total size 16kb, of which 10kb (63%) aligns to other genomes with a taxonomic mismatch.

• 10kb aligns to genome GCA_003221985.1, contig QHUQ01000105.1 at 95.3% identity

  • alignment from query QHWJ01000177.1[0:9999] to database QHUQ01000105.1[0:4751]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000411.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003221985.1, contig QHUQ01000058.1 at 100.0% identity

  • alignment from query QHWJ01000411.1[0:4999] to database QHUQ01000058.1[4617:0]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

• 5kb aligns to genome GCA_003221985.1, contig QHUQ01000058.1 at 98.6% identity

  • alignment from query QHWJ01000411.1[1169:6168] to database QHUQ01000058.1[4617:0]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000104.1, total size 16kb, of which 11kb (68%) aligns to other genomes with a taxonomic mismatch.

• 10kb aligns to genome GCA_003221985.1, contig QHUQ01000084.1 at 97.6% identity

  • alignment from query QHWJ01000104.1[5000:14999] to database QHUQ01000084.1[6223:0]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

• 5kb aligns to genome GCA_003221985.1, contig QHUQ01000084.1 at 98.4% identity

  • alignment from query QHWJ01000104.1[10606:15605] to database QHUQ01000084.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000219.1, total size 8kb, of which 5kb (61%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003221985.1, contig QHUQ01000069.1 at 98.9% identity

  • alignment from query QHWJ01000219.1[3203:8202] to database QHUQ01000069.1[0:4999]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota

contig name QHWJ01000061.1, total size 19kb, of which 19kb (100%) aligns to other genomes with a taxonomic mismatch.

• 19kb aligns to genome GCA_003222205.1, contig QHVC01000047.1 at 99.3% identity

  • alignment from query QHWJ01000061.1[0:19197] to database QHVC01000047.1[47964:29607]
  • disagreement at rank 'phylum'; query lineage p__Acidobacteriota, database lineage p__Gemmatimonadota