Charcoal alignment report for genome GCA_003221985.1_genomic.fna.gz

filtering dirty alignments to query size >= 500 and identity >= 95%

dirty bases: 100.5kb of alignments to query genome, across all targets.

filtering clean alignments to query size >= 500 and identity >= 95%

clean bases: 73.2kb of alignments to query genome, across all targets.

filtering dirty alignments to query size >= 500 and identity >= 95%

filtering dirty alignments to min query coverage 50%

dirty bases: 100.5kb of alignments to query genome, across all targets.

removing 103kb total in contigs >= 50% dirty, based on alignments at 95% identity over 0.5kb or more

Alignment views

showing 9 clean alignments total.

showing 21 dirty alignments total.

Contig alignment report

dirty bases: 100.5kb of alignments to query genome, across all targets.

contig name QHUQ01000139.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCA_003222535.1, contig QHWJ01000192.1 at 97.4% identity

  • alignment from query QHUQ01000139.1[0:6487] to database QHWJ01000192.1[7372:2123]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000011.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCA_003222535.1, contig QHWJ01000230.1 at 97.8% identity

  • alignment from query QHUQ01000011.1[0:5726] to database QHWJ01000230.1[19174:13637]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000098.1, total size 9kb, of which 9kb (100%) aligns to other genomes with a taxonomic mismatch.

• 9kb aligns to genome GCA_003222535.1, contig QHWJ01000360.1 at 98.7% identity

  • alignment from query QHUQ01000098.1[0:8927] to database QHWJ01000360.1[8404:0]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000231.1, total size 8kb, of which 8kb (100%) aligns to other genomes with a taxonomic mismatch.

• 8kb aligns to genome GCA_003222535.1, contig QHWJ01000238.1 at 98.4% identity

  • alignment from query QHUQ01000231.1[0:8058] to database QHWJ01000238.1[20027:28501]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000069.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000219.1 at 98.7% identity

  • alignment from query QHUQ01000069.1[0:5341] to database QHWJ01000219.1[2622:7621]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000094.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000236.1 at 98.4% identity

  • alignment from query QHUQ01000094.1[0:4999] to database QHWJ01000236.1[7583:2584]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000236.1 at 98.0% identity

  • alignment from query QHUQ01000094.1[517:5516] to database QHWJ01000236.1[7583:2584]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000084.1, total size 7kb, of which 7kb (100%) aligns to other genomes with a taxonomic mismatch.

• 7kb aligns to genome GCA_003222535.1, contig QHWJ01000104.1 at 99.0% identity

  • alignment from query QHUQ01000084.1[0:7259] to database QHWJ01000104.1[13568:5977]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000245.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCA_003222535.1, contig QHWJ01000251.1 at 99.6% identity

  • alignment from query QHUQ01000245.1[0:6081] to database QHWJ01000251.1[28079:21601]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000253.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000205.1 at 99.6% identity

  • alignment from query QHUQ01000253.1[0:4999] to database QHWJ01000205.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000205.1 at 99.6% identity

  • alignment from query QHUQ01000253.1[206:5205] to database QHWJ01000205.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000255.1, total size 5kb, of which 5kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000163.1 at 97.1% identity

  • alignment from query QHUQ01000255.1[0:5091] to database QHWJ01000163.1[0:3879]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000259.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000346.1 at 99.5% identity

  • alignment from query QHUQ01000259.1[0:4999] to database QHWJ01000346.1[69323:64324]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000346.1 at 98.9% identity

  • alignment from query QHUQ01000259.1[840:5839] to database QHWJ01000346.1[69323:64324]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000286.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000251.1 at 99.3% identity

  • alignment from query QHUQ01000286.1[0:4999] to database QHWJ01000251.1[45403:40404]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222535.1, contig QHWJ01000251.1 at 99.3% identity

  • alignment from query QHUQ01000286.1[524:5523] to database QHWJ01000251.1[45403:40404]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota

contig name QHUQ01000199.1, total size 8kb, of which 8kb (100%) aligns to other genomes with a taxonomic mismatch.

• 8kb aligns to genome GCA_003221695.1, contig QHSX01000065.1 at 100.0% identity

  • alignment from query QHUQ01000199.1[0:8291] to database QHSX01000065.1[134778:126396]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Methylomirabilota

contig name QHUQ01000065.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_005893295.1, contig VBOY01000126.1 at 97.9% identity

  • alignment from query QHUQ01000065.1[816:5815] to database VBOY01000126.1[53:5052]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Eisenbacteria

• 5kb aligns to genome GCA_005893295.1, contig VBOY01000126.1 at 98.8% identity

  • alignment from query QHUQ01000065.1[0:4999] to database VBOY01000126.1[107:5106]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Eisenbacteria

contig name QHUQ01000142.1, total size 6kb, of which 6kb (100%) aligns to other genomes with a taxonomic mismatch.

• 6kb aligns to genome GCA_005882635.1, contig VBFG01000050.1 at 100.0% identity

  • alignment from query QHUQ01000142.1[0:6317] to database VBFG01000050.1[5204:11267]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Chloroflexota

contig name QHUQ01000209.1, total size 8kb, of which 5kb (63%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003223135.1, contig QHXX01000030.1 at 98.4% identity

  • alignment from query QHUQ01000209.1[2996:7995] to database QHXX01000030.1[38676:33677]
  • disagreement at rank 'phylum'; query lineage p__Gemmatimonadota, database lineage p__Acidobacteriota