Charcoal alignment report for genome GCA_003220225.1_genomic.fna.gz

filtering dirty alignments to query size >= 500 and identity >= 95%

dirty bases: 509.3kb of alignments to query genome, across all targets.

filtering clean alignments to query size >= 500 and identity >= 95%

clean bases: 313.1kb of alignments to query genome, across all targets.

filtering dirty alignments to query size >= 500 and identity >= 95%

filtering dirty alignments to min query coverage 50%

dirty bases: 65.4kb of alignments to query genome, across all targets.

removing 90kb total in contigs >= 50% dirty, based on alignments at 95% identity over 0.5kb or more

Alignment views

showing 4 clean alignments total.

showing 13 dirty alignments total.

Contig alignment report

dirty bases: 65.4kb of alignments to query genome, across all targets.

contig name QHRU01000098.1, total size 7kb, of which 5kb (72%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000595.1 at 99.0% identity

  • alignment from query QHRU01000098.1[1913:6912] to database QHVJ01000595.1[2723:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000167.1, total size 5kb, of which 5kb (97%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000347.1 at 96.1% identity

  • alignment from query QHRU01000167.1[0:4999] to database QHVJ01000347.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000101.1, total size 8kb, of which 5kb (61%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000580.1 at 98.2% identity

  • alignment from query QHRU01000101.1[3142:8141] to database QHVJ01000580.1[0:2847]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000029.1, total size 6kb, of which 5kb (80%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000566.1 at 95.2% identity

  • alignment from query QHRU01000029.1[1239:6238] to database QHVJ01000566.1[0:2730]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000013.1, total size 13kb, of which 10kb (75%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000436.1 at 96.2% identity

  • alignment from query QHRU01000013.1[0:4999] to database QHVJ01000436.1[5058:59]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000529.1 at 95.2% identity

  • alignment from query QHRU01000013.1[5000:9999] to database QHVJ01000529.1[0:3936]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000018.1, total size 12kb, of which 7kb (59%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000597.1 at 96.8% identity

  • alignment from query QHRU01000018.1[5000:9999] to database QHVJ01000597.1[3956:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000597.1 at 97.9% identity

  • alignment from query QHRU01000018.1[7158:12157] to database QHVJ01000597.1[3956:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000079.1, total size 30kb, of which 20kb (67%) aligns to other genomes with a taxonomic mismatch.

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000575.1 at 96.2% identity

  • alignment from query QHRU01000079.1[20000:24999] to database QHVJ01000575.1[2647:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

• 10kb aligns to genome GCA_003222275.1, contig QHVJ01000092.1 at 99.1% identity

  • alignment from query QHRU01000079.1[5000:14999] to database QHVJ01000092.1[0:8098]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000426.1 at 100.0% identity

  • alignment from query QHRU01000079.1[25000:29999] to database QHVJ01000426.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

• 5kb aligns to genome GCA_003222275.1, contig QHVJ01000426.1 at 100.0% identity

  • alignment from query QHRU01000079.1[25095:30094] to database QHVJ01000426.1[4999:0]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota

contig name QHRU01000087.1, total size 8kb, of which 8kb (100%) aligns to other genomes with a taxonomic mismatch.

• 8kb aligns to genome GCA_003222275.1, contig QHVJ01000397.1 at 96.8% identity

  • alignment from query QHRU01000087.1[0:8202] to database QHVJ01000397.1[0:4737]
  • disagreement at rank 'phylum'; query lineage p__Methylomirabilota, database lineage p__Acidobacteriota